PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2316
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 323aa    MW: 35508.4 Da    PI: 7.3036
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2316genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.51.4e-08167224562
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  kr++r   NR +A rs +RK  ++ eLe+kv++L++e + L  ++  l+     l++e
  Gh_A05G2316 167 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATNLSAQVTILQRDTTGLTTE 224
                  9****************************************99888777766666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-15163227IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.898165228IPR004827Basic-leucine zipper domain
PfamPF001701.1E-7167224IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-11167219No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-10167221No hitNo description
CDDcd147031.97E-23168217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDQIPPRGVH HRRAHSDTTF RFDDLLLFDP SDLDLSSLDL PASSSNPTPP PVVPVPIYSS  60
DDSSSNGHHP RSSHSNPRQI SSHLRSLSVD SDFFDGLGLT GPAISGGAGD EKFGGKGAAG  120
EKRVHHRNSN SMDGTASFEV ESLMAVDGVK KAIAPDRLAE LALIDPKRAK RILANRQSAA  180
RSKERKIRYT SELERKVQTL QTEATNLSAQ VTILQRDTTG LTTENKELKL RLQAMEQQAQ  240
LRDALNEALR EEVQRLKIQA GQLSAMNGNH FNGGLPQFFS HQPSPHHFGG QQTPQQQQHQ  300
QMPESSTNIG HPQPQFMDFN QGA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.212580.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446799.10.0PREDICTED: transcription factor VIP1-like
SwissprotQ9MA753e-90VIP1_ARATH; Transcription factor VIP1
TrEMBLA0A0D2TWS40.0A0A0D2TWS4_G
STRINGVIT_18s0076g00330.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79932639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.14e-74VIRE2-interacting protein 1